MirGeneDB ID | Ava-Novel-9 |
Family name |
AVA-NOVEL-9 (all species) |
Seed |
GUAUUCU |
Species |
Bdelloid rotifer (Adineta vaga) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
A. vaga
|
Node of Origin (family) |
A. vaga
|
Genome context (GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 9654906-9654964 [-]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUUCUCUAAAUAUUAUUUCGUAAAACUAAGUGUAUUCUCAAGCACUAGUAAUCGUAUAUGAUGUUUUAUUAUUGCUUGAGAGUAUUCCUUAACAUUGUACGAUACAUCAUCGAUCAUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUCUCUAAAUAUUAUUU AAAC-- U-| C UCGUAU
CGUA UAAG GUAUUCUCAAGCA UAGUAA A
GCAU AUUC UAUGAGAGUUCGU AUUAUU U
GGUACUAGCUACUACAUA GUUACA CU^ U UUGUAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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|
Mature sequence |
Ava-Novel-9_5p |
mirBase accession | None |
Sequence |
0- UGUAUUCUCAAGCACUAGUAA -21
Get sequence
|
Star sequence |
Ava-Novel-9_3p* |
mirBase accession | None |
Sequence |
37- AUUAUUGCUUGAGAGUAUUCCU -59
Get sequence
|