MirGeneDB 3.0

MirGeneDB ID

Ava-Novel-9

Family name AVA-NOVEL-9 (all species)
Seed GUAUUCU
Species Bdelloid rotifer (Adineta vaga)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) A. vaga
Node of Origin (family) A. vaga
Genome context
(GCA_021613535.1_ASM2161353v1_AVA)
CP075497.1: 9654906-9654964 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCUCUAAAUAUUAUUUCGUAAAACUAAGUGUAUUCUCAAGCACUAGUAAUCGUAUAUGAUGUUUUAUUAUUGCUUGAGAGUAUUCCUUAACAUUGUACGAUACAUCAUCGAUCAUGG
Get precursor sequence
Structure
        10        20          30         40        50        
CUUCUCUAAAUAUUAUUU    AAAC--    U-|            C      UCGUAU 
                  CGUA      UAAG  GUAUUCUCAAGCA UAGUAA      A
                  GCAU      AUUC  UAUGAGAGUUCGU AUUAUU      U
GGUACUAGCUACUACAUA    GUUACA    CU^            U      UUGUAG 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To To
Mature sequence

Ava-Novel-9_5p

mirBase accessionNone
Sequence
0- UGUAUUCUCAAGCACUAGUAA -21
Get sequence
Star sequence

Ava-Novel-9_3p*

mirBase accessionNone
Sequence
37- AUUAUUGCUUGAGAGUAUUCCU -59
Get sequence