MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-2062

Family name MIR-2062 (all species)
Seed GCAACAA
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-2062
Paralogues
Orthologues Bla-Mir-2062 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049986.1: 15355280-15355338 [+] UCSC
Precursor
(pre-Mir +30nt flank)
GGGCUGUGUUCAUUCACGGCCGCCCUGCUCUGCAACAAUAUUUCAUCAGUGGUGAACUCCAAAAUCUACUGGUGAAAUGUAGUUGCGUAGGAGGCCGGCCACUGUCAACAGGGGGAACG
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Structure
        10          20        30        40        50         
GGGCUGUGUUCAUUCAC--|    C   G  C      A               UGAACU 
                   GGCCG CCU CU UGCAAC AUAUUUCAUCAGUGG      \
                   CCGGC GGA GA GCGUUG UGUAAAGUGGUCAUC      C
GCAAGGGGGACAACUGUCA^    C   G  U      A               UAAAAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Mature sequence

Bfl-Mir-2062_5p

mirBase accessionMIMAT0009988
Sequence
0- UGCAACAAUAUUUCAUCAGUGG -22
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Star sequence

Bfl-Mir-2062_3p*

mirBase accessionMIMAT0019169
Sequence
37- ACUGGUGAAAUGUAGUUGCGUA -59
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