| MirGeneDB ID | Bfl-Mir-4880 |
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| Family name |
MIR-4880 (all species) |
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| Seed |
UUGCUAU |
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| Species |
Florida lancelet (Branchiostoma floridae) |
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| MiRBase ID |
bfl-mir-4880
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| Paralogues |
|
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| Orthologues |
Bla-Mir-4880
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049980.1: 18843929-18843988 [+]
UCSC
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Precursor
(pre-Mir +30nt flank) |
AACUUCUUCACAUGUAGUCCACUUUCUUGGUUUGCUAUUCGAUGACCAGUGGUCAAUUUCAAAAACCCAGUGGUCAAACAAUAGCAAACCCGGCGAGUGUGAAAGAUCCACCAUAUAAAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AACUUCUUCACAUGUAG- -| U U CGA G UCAAUU
UC CACUU CU GGUUUGCUAUU UGACCA UGG U
AG GUGAG GG CCAAACGAUAA ACUGGU ACC C
CAAAUAUACCACCUAGAA U^ C C CAA G CAAAAA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Unknown
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Bfl-Mir-4880_5p |
| mirBase accession | MIMAT0020463 |
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| Sequence |
0- UUUGCUAUUCGAUGACCAGUGG -22
Get sequence
|
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| Star sequence |
Bfl-Mir-4880_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
38- AGUGGUCAAACAAUAGCAAACC -60
Get sequence
|
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