| MirGeneDB ID | Bfl-Novel-1-P1 |
|---|
| Family name |
BRA-NOVEL-1 (all species) |
|---|
| Seed |
GAGCCUC |
|---|
| Species |
Florida lancelet (Branchiostoma floridae) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bfl-Novel-1-P2
Bfl-Novel-1-P3
|
|---|
| Orthologues |
Bla-Novel-1-P1a
Bla-Novel-1-P1b
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic) |
NC_049990.1: 15555062-15555121 [-]
UCSC
|
|---|
Precursor
(pre-Mir +30nt flank) |
ACCGUCUAACAUUUUCCCUGCCUCUGGGCUCAGUGGUCGGUUGAGACUCGCGUGUUUUUGUGACAUCACGAGCCUCGACUAACCACUGCUCCCAGGGGUGGGCUGAACGACUGGACACCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
ACCGUCUAACAUUUUCC--|UG CU CG A CGUGUUUU
C CCUCUGGG CAGUGGU GUUGAG CUCG U
G GGGGACCC GUCACCA CAGCUC GAGC G
GCCACAGGUCAGCAAGUCG^GU UC AU C ACUACAGU
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17), UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bfl-Novel-1-P1_5p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- CAGUGGUCGGUUGAGACUCGCG -22
Get sequence
|
|---|
| Mature sequence |
Bfl-Novel-1-P1_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CGAGCCUCGACUAACCACUGCU -60
Get sequence
|
|---|
