| MirGeneDB ID | Bge-Novel-11 |
|---|
| Family name |
BGE-NOVEL-11 (all species) |
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| Seed |
GGUCAUG |
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| Species |
Cockroach (Blattella germanica) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. germanica
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| Node of Origin (family) |
B. germanica
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Genome context
(Bger_2.0) |
KZ614500.1: 96730-96787 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGAAGAACAUCAAUUAUACUGGUUUCUUUUUGGUCAUGACUUCAGCAAUUUUGUGAUUUUUUAUAAAAUGGCUAUUGUUAUGUCCUCGAAGCACCAGUUUCCCAGCAAGAAAGAUCGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UGAAGAACAUCAAUUAU---| UU UU U UUC A GUGAU
ACUGGU CUUU GG CAUGAC AGC AUUUU U
UGACCA GAAG CC GUAUUG UCG UAAAA U
AGCUAGAAAGAACGACCCUU^ C- CU U UUA G UAUUU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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| Mature sequence |
Bge-Novel-11_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUCAUGACUUCAGCAAUUUU -22
Get sequence
|
|---|
| Star sequence |
Bge-Novel-11_3p* |
| mirBase accession | None |
|---|
| Sequence |
36- AAUGGCUAUUGUUAUGUCCUCG -58
Get sequence
|
|---|
