| MirGeneDB ID | Bge-Novel-20 |
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| Family name |
BGE-NOVEL-20 (all species) |
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| Seed |
CACUGGA |
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| Species |
Cockroach (Blattella germanica) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. germanica
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| Node of Origin (family) |
B. germanica
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Genome context
(Bger_2.0) |
KZ614999.1: 53381-53441 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAGGGAAGGUGAUAUGCACUAUUGGUGAAUGGUAGUGACUUCCCAAGUGAUGUUACAUUCUAAAUUCAUCACUGGAAAGGCAAUAUCAUUAGCUACAAGUGAGAAGCAACAAACUAAGAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
AAAGGGAAGGUGAUAUG--| AU G G A C A UUACAU
CACU UGGU AAUGGUA UG CUU CCA GUGAUG U
GUGA AUCG UUACUAU AC GAA GGU CACUAC C
UAGAAUCAAACAACGAAGA^ AC A A G A - UUAAAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Ad |
Co |
Co |
Di |
Di |
Eg |
Eg |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
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| Star sequence |
Bge-Novel-20_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUAGUGACUUCCCAAGUGAUG -23
Get sequence
|
|---|
| Mature sequence |
Bge-Novel-20_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCACUGGAAAGGCAAUAUCAUU -61
Get sequence
|
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