| MirGeneDB ID | Bko-Mir-12599-P1d |
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| Family name |
MIR-12599 (all species) |
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| Seed |
ACUAAAA |
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| Species |
Monogonont Rotifer 2 (Brachionus koreanus) |
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| MiRBase ID |
|
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| Paralogues |
Bko-Mir-12599-P1c
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| Orthologues |
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| Node of Origin (locus) |
B. koreanus
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| Node of Origin (family) |
Brachionus
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Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom) |
PJRA01000016.1: 494383-494441 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUCAAAUCAACUAAUUACUUUGUUUCAAUGCACUAAAAUACGGUAUAGCGGGUAGGAAUAUUCAACCGCUAUGCCCUGUUUUAGUACCAUUGAGCAAGUUUAAUUUUCAUCCAUCUAUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUCAAAUCAACUAAUUAC---| U C- C GUAGGA
UUUGUU CAAUG ACUAAAAUA GGUAUAGCGG A
GAACGA GUUAC UGAUUUUGU CCGUAUCGCC U
UUAUCUACCUACUUUUAAUUU^ - CA C AACUUA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | The 3' end of the 5p arm may be monouridylated. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Bko-Mir-12599-P1d_5p |
| mirBase accession | None |
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| Sequence |
0- CACUAAAAUACGGUAUAGCGGG -22
Get sequence
|
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| Star sequence |
Bko-Mir-12599-P1d_3p* |
| mirBase accession | None |
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| Sequence |
36- CGCUAUGCCCUGUUUUAGUACCA -59
Get sequence
|
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