| MirGeneDB ID | Bla-Mir-2057 |
|---|
| Family name |
MIR-2057 (all species) |
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| Seed |
GAGAAGU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-2057
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000110: 922534-922594 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGUAGUUCCACGGCAUGGAGUCGGGACGGGUGAGAAGUUAGCCAACCAUCCGGCGGGUAUGUGGUACCCGGGUGGUGGUUGACUUCUUCCUCGUUACGGCUCAAUAAUCACCGGAUCGCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UGUAGUUCCACGGCAUG--| GG UG A CGGGUA
GAGUCG ACGGG AGAAGUUAGCCA CCAUCCGG U
CUCGGC UGCUC UCUUCAGUUGGU GGUGGGCC G
GGCGCUAGGCCACUAAUAA^ AU CU - CAUGGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-2057_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGAGAAGUUAGCCAACCAUCCGG -23
Get sequence
|
|---|
| Star sequence |
Bla-Mir-2057_3p* |
| mirBase accession | None |
|---|
| Sequence |
39- GGGUGGUGGUUGACUUCUUCCU -61
Get sequence
|
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