MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-2057

Family name MIR-2057 (all species)
Seed GAGAAGU
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-2057 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000110: 922534-922594 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGUAGUUCCACGGCAUGGAGUCGGGACGGGUGAGAAGUUAGCCAACCAUCCGGCGGGUAUGUGGUACCCGGGUGGUGGUUGACUUCUUCCUCGUUACGGCUCAAUAAUCACCGGAUCGCGG
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Structure
        10          20        30        40        50        60
UGUAGUUCCACGGCAUG--|     GG     UG            A        CGGGUA 
                   GAGUCG  ACGGG  AGAAGUUAGCCA CCAUCCGG      U
                   CUCGGC  UGCUC  UCUUCAGUUGGU GGUGGGCC      G
GGCGCUAGGCCACUAAUAA^     AU     CU            -        CAUGGU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
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Mature sequence

Bla-Mir-2057_5p

mirBase accessionNone
Sequence
0- UGAGAAGUUAGCCAACCAUCCGG -23
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Star sequence

Bla-Mir-2057_3p*

mirBase accessionNone
Sequence
39- GGGUGGUGGUUGACUUCUUCCU -61
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