MirGeneDB ID | Bla-Mir-22-o3a3 |
Family name |
MIR-22 (all species) |
Seed |
UUUCUUC |
Species |
European lancelet (Branchiostoma lanceolatum) |
MiRBase ID |
|
Paralogues |
Bla-Mir-22-o3a1a
Bla-Mir-22-o3a1b
Bla-Mir-22-o3a1c
Bla-Mir-22-o3a1d
Bla-Mir-22-o3a2a
Bla-Mir-22-o3a2b
Bla-Mir-22-o3b1
Bla-Mir-22-o3b2
Bla-Mir-22-o3b3
Bla-Mir-22-o3c1
Bla-Mir-22-o3c2
Bla-Mir-22-P1
Bla-Mir-22-P2a
Bla-Mir-22-P2b
Bla-Mir-22-P2c
|
Orthologues |
|
Node of Origin (locus) |
B. lanceolatum
|
Node of Origin (family) |
Bilateria
|
Genome context (BraLan2) |
Sc0000015: 693308-693366 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAAUGAAUUAUACGAGCCUUGCUAAGAGUUUUUCUUCGCCGGCACAGCUCUGUGACGGUAUAACCAUAGCUGGCUGGCGAAGAAAUGCCCUUCCAAUGUGCUGUCUUCAUAAAACCAC
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAAUGAAUUAUACGAGCC---| CU A U A C UGACG
UUG AAG GU UUUCUUCGCCGGC CAGCU UG G
AAC UUC CG AAAGAAGCGGUCG GUCGA AC U
CACCAAAAUACUUCUGUCGUGU^ C- C U - U CAAUA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Bla-Mir-22-o3a3_5p |
mirBase accession | None |
Sequence |
0- UUUUCUUCGCCGGCACAGCUCUG -23
Get sequence
|
Co-mature sequence |
Bla-Mir-22-o3a3_3p |
mirBase accession | None |
Sequence |
37- UAGCUGGCUGGCGAAGAAAUGC -59
Get sequence
|