| MirGeneDB ID | Bla-Mir-4879 |
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| Family name |
MIR-4879 (all species) |
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| Seed |
AAACUAU |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
Bfl-Mir-4879
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| Node of Origin (locus) |
Branchiostoma
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| Node of Origin (family) |
Branchiostoma
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Genome context
(BraLan2) |
Sc0000003: 2374830-2374888 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCCUCGCGUGUGUCGCUCCCUCCAGAUGUUAAACUAUCGUUCUGGGAACAGUCGCUCUUACAAGCUGUUCCCAUGGAGAUAGCUUAGCAACUCCUCCGCAACUGGCCAGAAGUCUCAC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUCCUCGCGUGUGUCGCUCCCUCC--| A A G - UCGCUC
AG UGUUAA CUAUC UUC UGGGAACAG \
UC ACGAUU GAUAG AGG ACCCUUGUC U
CACUCUGAAGACCGGUCAACGCCUCC^ A C - U GAACAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut -1 on the 3p arm. It also appears that the 3' end of the 5p arm is monouridylated. |
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| Mature sequence |
Bla-Mir-4879_5p |
| mirBase accession | None |
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| Sequence |
0- UAAACUAUCGUUCUGGGAACAG -22
Get sequence
|
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| Star sequence |
Bla-Mir-4879_3p* |
| mirBase accession | None |
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| Sequence |
37- GUUCCCAUGGAGAUAGCUUAGC -59
Get sequence
|
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