| MirGeneDB ID | Bla-Mir-4888 |
|---|
| Family name |
MIR-4888 (all species) |
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| Seed |
GCAGAGC |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bfl-Mir-4888
|
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| Node of Origin (locus) |
Branchiostoma
|
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| Node of Origin (family) |
Branchiostoma
|
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Genome context
(BraLan2) |
Sc0000359: 233080-233139 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUCCACACACAGUACAGGGGUUGUGUGAGAUGCAGAGCUUGUGCGAUUGGCGCUUGACAAGUGAAGGGCGCCACACUCGAGCUCUCCAUCCCACCCACCUCACUCAGACGCCGCCUAAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CUCCACACACAGUACAG--| U U A C UGCGAU UGACA
GGG UG GUG GAUG AGAGCUUG UGGCGCU A
CUC AC CAC CUAC UCUCGAGC ACCGCGG G
AUAAUCCGCCGCAGACUCA^ C C C C UCAC-- GAAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Bla-Mir-4888_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UGCAGAGCUUGUGCGAUUGGCGCU -24
Get sequence
|
|---|
| Star sequence |
Bla-Mir-4888_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CGCCACACUCGAGCUCUCCAUC -60
Get sequence
|
|---|
