| MirGeneDB ID | Bla-Novel-4 |
|---|
| Family name |
BRA-NOVEL-4 (all species) |
|---|
| Seed |
CAUGAUA |
|---|
| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bfl-Novel-4
|
|---|
| Node of Origin (locus) |
Branchiostoma
|
|---|
| Node of Origin (family) |
Branchiostoma
|
|---|
Genome context
(BraLan2) |
Sc0000149: 356131-356190 [-]
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
AACGAGAGCUGACAUUUUCCCGCGGUCGGGUACUGUGUCCUUCCAUCAUAGUGUGUUUCUAUACGUCACCAUGAUACAGGACACAGCCCCUGACUGUGGGACCAAGCACGGCCGUGGUGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACGAGAGCUGACAUUU--| UA UCC A UGUUUC
UCCCGCGGUCGGG CUGUGUCCU AUCAU GUG \
AGGGUGUCAGUCC GACACAGGA UAGUA CAC U
AGUGGUGCCGGCACGAACC^ CC CA- C UGCAUA
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
|
|---|
| Star sequence |
Bla-Novel-4_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UACUGUGUCCUUCCAUCAUAGUG -23
Get sequence
|
|---|
| Mature sequence |
Bla-Novel-4_3p |
| mirBase accession | None |
|---|
| Sequence |
38- CCAUGAUACAGGACACAGCCCC -60
Get sequence
|
|---|
