| MirGeneDB ID | Bla-Novel-9-P1 |
|---|
| Family name |
BLA-NOVEL-3 (all species) |
|---|
| Seed |
AUCAGAA |
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| Species |
European lancelet (Branchiostoma lanceolatum) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Bla-Novel-9-P2
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
B. lanceolatum
|
|---|
| Node of Origin (family) |
B. lanceolatum
|
|---|
Genome context
(BraLan2) |
Sc0000024: 1729961-1730019 [+]
Ensembl
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|---|
Precursor
(pre-Mir +30nt flank) |
CUGAGGCACAGUCAAGUACCUGUUUGGUUGAAUCAGAACUCACAAGUCCCGAUAGUUCUUAUCAGCCAGGACUUGUGAGUUCUGAUCCAACCACACCGGAAAAUGUCAUCAGUGUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUGAGGCACAGUCAAGUA--| U U A CGAUAGUUC
CC GU UGGUUG AUCAGAACUCACAAGUCC \
GG CA ACCAAC UAGUCUUGAGUGUUCAGG U
AGAAUGUGACUACUGUAAAA^ C C C ACCGACUAU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Bla-Novel-9-P1_5p |
| mirBase accession | None |
|---|
| Sequence |
0- AAUCAGAACUCACAAGUCCCGA -22
Get sequence
|
|---|
| Star sequence |
Bla-Novel-9-P1_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- AGGACUUGUGAGUUCUGAUCCA -59
Get sequence
|
|---|
