MirGeneDB ID | Bpl-Mir-12599-P1b |
Family name |
MIR-12599 (all species) |
Seed |
ACUAAAA |
Species |
Monogonont Rotifer 1 (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Mir-12599-P1a
|
Orthologues |
|
Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
Brachionus
|
Genome context (Bpl_ASM1027981) |
QEOQ01000670.1: 1230305-1230363 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGGAUCAGUGAGUCAACUCGCUUCAGUGCACUAAAAUACGGUAUAGCGGGUAGGUAGUAACGACCGCUGUGCCCUAUUUUAGUACCACUGAACGGGUGCACAGAGCUACGCAAAUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGGAUCAGUGAGUCA---| C C- C GUAGGU
ACUCG UUCAGUG ACUAAAAUA GGUAUAGCGG A
UGGGC AAGUCAC UGAUUUUAU CCGUGUCGCC G
UUUAAACGCAUCGAGACACG^ - CA C AGCAAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3' end of the 5p arm may be monouridylated. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Bpl-Mir-12599-P1b_5p |
mirBase accession | None |
Sequence |
0- CACUAAAAUACGGUAUAGCGGG -22
Get sequence
|
Star sequence |
Bpl-Mir-12599-P1b_3p* |
mirBase accession | None |
Sequence |
36- CGCUGUGCCCUAUUUUAGUACCA -59
Get sequence
|