| MirGeneDB ID | Bta-Mir-3660 |
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| Family name |
MIR-3660 (all species) |
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| Seed |
CUGACAG |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-3660
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
B. taurus
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| Node of Origin (family) |
B. taurus
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037334.1: 89558112-89558171 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGAAGAGCGAAAGAAGAACUGGACAAAGUUAAAAUGCUAUUCUGUCAUUGUGAUAGUUCAUAUGGGCACUGACAGGAGAGCAUUUUAAUUUUGUCAAGCGUGUCUGCUACUCAUUUAUU
Get precursor sequence
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| Structure | 10 20 30 40 50
AUGAAGAGCGAAAGAAGAA--| G A U GAUAGU
CU GACAAAGUUAAAAUGCU UUCUGUCA UGU U
GA CUGUUUUAAUUUUACGA AGGACAGU ACG C
UUAUUUACUCAUCGUCUGUGC^ A G C GGUAUA
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | Although loci are found in other mammals including human and sometimes with expression of the 3p arm, only in cow are star reads found. Further there are often changes to the seed sequence. Thus for the time being this locus is only annotated in the cow. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ad |
Bo |
Br |
Ce |
Co |
Co |
De |
Fe |
He |
Hy |
Ir |
Ki |
La |
Lo |
Mi |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-3660_5p* |
| mirBase accession | None |
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| Sequence |
0- UAAAAUGCUAUUCUGUCAUUGU -22
Get sequence
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| Mature sequence |
Bta-Mir-3660_3p |
| mirBase accession | MIMAT0025555 |
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| Sequence |
38- ACUGACAGGAGAGCAUUUUAAU -60
Get sequence
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| Proposed targets |
TargetScanVert: bta-miR-3660
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