MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-1830

Family name MIR-1830 (all species)
Seed CUAGGAA
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-1830
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrII: 4371838-4371907 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAUGUUCGGUUUUCACUGUCGGUGAGUGGCCGAGGUUUCACGUUUUCUAGGCCACGCCGCAAAUAGCCAGCUUGUGGCCUAGGAAAUGAGAAAACUCGGCCACUCUUUCAGCACAUUUUUCAAAUACACG
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Structure
        10         20         30        40        50        60    
AAUGUUCGGUUUUCACU-  C  U-|          G    A             ACGCCGCAAA 
                  GU GG  GAGUGGCCGAG UUUC CGUUUUCUAGGCC          U
                  CG CU  CUCACCGGCUC AAAG GUAAAGGAUCCGG          A
GCACAUAAACUUUUUACA  A  UU^          A    A             UGUUCGACCG 
.       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-1830_5p*

mirBase accessionMIMAT0006772
Sequence
0- CGAGGUUUCACGUUUUCUAGGCC -23
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Proposed targets microrna.org: MIMAT0006772
TargetScanWorm: cel-miR-1830
Mature sequence

Cel-Mir-1830_3p

mirBase accessionMIMAT0020778
Sequence
47- CCUAGGAAAUGAGAAAACUCGGC -70
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