MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-2953

Family name MIR-2953 (all species)
Seed GAUCACU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-2953
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrII: 6747182-6747242 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAUAACUAGAAGACUUCAAAUUUCCAGAUACAGAAGUGUUCGUGAAAAUAAAUAUGUGUUUUUUUUAUGAUCACUAGCUCUUCUGUAGCUGAAAAAACUUGAAAAUAAUAUUUUAAUCG
Get precursor sequence
Structure
        10        20          30        40        50          
AUGAUAACUAGAAGACUUCAAAUUUC--|  A        U   C    AA   AAUAUGU 
                            CAG UACAGAAG GUU GUGA  AUA       \
                            GUC AUGUCUUC CGA CACU  UAU       G
GCUAAUUUUAUAAUAAAAGUUCAAAAAA^  G        U   U    AG   UUUUUUU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Star sequence

Cel-Mir-2953_5p*

mirBase accessionMIMAT0014446
Sequence
0- UACAGAAGUGUUCGUGAAAAUA -22
Get sequence
Proposed targets microrna.org: MIMAT0014446
TargetScanWorm: cel-miR-2953-5p
Mature sequence

Cel-Mir-2953_3p

mirBase accessionMIMAT0014447
Sequence
39- UGAUCACUAGCUCUUCUGUAGC -61
Get sequence
Proposed targets microrna.org: MIMAT0014447
TargetScanWorm: cel-miR-2953-3p