MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-4806

Family name MIR-4806 (all species)
Seed ACUUACC
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-4806
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrII: 12346312-12346365 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAAUCCAUGGCUUCGGAUUCAGUGGCGAGCCACUUACCGGCUGAGCCAUGCGCGCUGCGCUGCAUAGCUCAGCCGGUAAGAGGCUUGCCUUUGGAGCAAAAGGUCACGGUUCGA
Get precursor sequence
Structure
        10          20        30        40        50      
GAAUCCAUGGCUUCGGA--|    U        A              C    GCGC 
                   UUCAG GGCGAGCC CUUACCGGCUGAGC AUGC    U
                   AGGUU CCGUUCGG GAAUGGCCGACUCG UACG    G
AGCUUGGCACUGGAAAACG^    U        A              A    UCGC 
  110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-4806_5p

mirBase accessionMIMAT0019988
Sequence
0- CACUUACCGGCUGAGCCAUGC -21
Get sequence
Star sequence

Cel-Mir-4806_3p*

mirBase accessionMIMAT0019989
Sequence
33- AUAGCUCAGCCGGUAAGAGGC -54
Get sequence