MirGeneDB ID | Cel-Mir-4806 |
Family name |
MIR-4806 (all species) |
Seed |
ACUUACC |
Species |
Roundworm (Caenorhabditis elegans) |
MiRBase ID |
cel-mir-4806
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. elegans
|
Node of Origin (family) |
C. elegans
|
Genome context (ce11) |
chrII: 12346312-12346365 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAAUCCAUGGCUUCGGAUUCAGUGGCGAGCCACUUACCGGCUGAGCCAUGCGCGCUGCGCUGCAUAGCUCAGCCGGUAAGAGGCUUGCCUUUGGAGCAAAAGGUCACGGUUCGA
Get precursor sequence
|
Structure | 10 20 30 40 50
GAAUCCAUGGCUUCGGA--| U A C GCGC
UUCAG GGCGAGCC CUUACCGGCUGAGC AUGC U
AGGUU CCGUUCGG GAAUGGCCGACUCG UACG G
AGCUUGGCACUGGAAAACG^ U A A UCGC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Cel-Mir-4806_5p |
mirBase accession | MIMAT0019988 |
Sequence |
0- CACUUACCGGCUGAGCCAUGC -21
Get sequence
|
Star sequence |
Cel-Mir-4806_3p* |
mirBase accession | MIMAT0019989 |
Sequence |
33- AUAGCUCAGCCGGUAAGAGGC -54
Get sequence
|