MirGeneDB 3.0

MirGeneDB ID

Cel-Mir-800

Family name MIR-800 (all species)
Seed GACAAUU
Species Roundworm (Caenorhabditis elegans)
MiRBase ID cel-mir-800
Paralogues
Orthologues
Node of Origin (locus) C. elegans
Node of Origin (family) C. elegans
Genome context
(ce11)
chrX: 380925-380983 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCCAAAGGGUAGGAUACCGUGAACGGCGGCUGACAAUUUCCGAGUUAGGCCACUCUUAUAAUCAGUGGCCAAACUCGGAAAUUGUCUGCCGCCGUGAAAACCUACCCCUCGGAAAAUAU
Get precursor sequence
Structure
        10        20          30        40        50         
UCCAAAGGGUAGGAUACC  GA--|       U               A     CUCUUA 
                  GU    ACGGCGGC GACAAUUUCCGAGUU GGCCA      \
                  CA    UGCCGCCG CUGUUAAAGGCUCAA CCGGU      U
UAUAAAAGGCUCCCCAUC  AAAG^       U               A     GACUAA 
       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Da Ea Mi Wi Yo Yo
Mature sequence

Cel-Mir-800_5p

mirBase accessionMIMAT0020354
Sequence
0- UGACAAUUUCCGAGUUAGGCCA -22
Get sequence
Co-mature sequence

Cel-Mir-800_3p

mirBase accessionMIMAT0004235
Sequence
37- GCCAAACUCGGAAAUUGUCUGC -59
Get sequence
Proposed targets microrna.org: MIMAT0004235
TargetScanWorm: cel-miR-800