MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-1838

Family name MIR-1838 (all species)
Seed CACCAGC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-1838
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)		 chr21: 20592019-20592076 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCCACAAGAGGUGAUGCGCUGGCGCCCCCACCAGCUGGCGUUCCCUGGCGUGGGAACGAGAGGCAGGGGCUGCUGGCUGGAGGGAGCGCCUUCUCUCACUCGCCGCCUCCGCGUC
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Structure
        10        20          30        40        50        
AGUGCCACAAGAGGUGAUGCGCU--|    C   A     UG   UU     GCGUGGG 
                         GGCGC CCC CCAGC  GCG  CCCUG       A
                         CCGCG GGG GGUCG  CGU  GGGAC       A
CUGCGCCUCCGCCGCUCACUCUCUU^    A   A     GU   CG     GGAGAGC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-1838_5p
mirBase accessionMIMAT0006644
Sequence 
0- CCACCAGCUGGCGUUCCCUGGC -22
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Proposed targets TargetScanVert: cfa-miR-1838
miRDB: MIMAT0006644
Star sequence

Cfa-Mir-1838_3p*
mirBase accessionNone
Sequence 
36- CAGGGGCUGCUGGCUGGAGGGA -58
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