| MirGeneDB ID | Cfa-Novel-1 |
|---|
| Family name |
CFA-NOVEL-1 (all species) |
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| Seed |
GAGCAUU |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr1: 71774336-71774393 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGCACUGCCUGGCCGGGAGCCUCCCGCCUCCACCAGGGCCUGUGCUUCCUGGAGUCUGACCCCUGCCAGAGCAUUGGCCCUGGGAAGGUGAGGGGUCAUCUUGCGUGGGCCUGGUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGCACUGCCUGGCCGG---| G C CCA U UC AGUCUG
GA CCUC CGCCU CCAGGGCC GUGCU CUGG \
CU GGGG GUGGA GGUCCCGG UACGA GACC A
ACUGGUCCGGGUGCGUUCUA^ - A AG- U -- GUCCCC
110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
Yes
|
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| Motifs | No |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CCACCAGGGCCUGUGCUUCCUGG -23
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
38- AGAGCAUUGGCCCUGGGAAG -58
Get sequence
|
|---|
