MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-10

Family name CFA-NOVEL-10 (all species)
Seed UCAGUCU
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr24: 22892649-22892709 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUUCACUGACAGAGAAAACAGCUGGAGAGGAGUGGCAGUCAGGACCUGGAGCUGAUAAGGGUUUUCUCUUCAGUCUUUGGCCUGCCUCUCCUUGCCAGGUGUGCUGGUCUCCCAUCUACUG
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Structure
        10          20        30         40        50         
CUUCACUGACAGAGAAA--   G    AG     U    -|     AC      CUGAUAA 
                   ACA CUGG  AGGAG GGCA GUCAGG  CUGGAG       G
                   UGU GACC  UCCUC CCGU CGGUUU  GACUUC       G
GUCAUCUACCCUCUGGUCG   G    GU     U    C^     CU      UCUUUUG 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Novel-10_5p*

mirBase accessionNone
Sequence
0- AGUGGCAGUCAGGACCUGGAGC -22
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Mature sequence

Cfa-Novel-10_3p

mirBase accessionNone
Sequence
38- UUCAGUCUUUGGCCUGCCUCUCC -61
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