| MirGeneDB ID | Cfa-Novel-11 |
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| Family name |
CFA-NOVEL-11 (all species) |
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| Seed |
CUCCUGG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr28: 21274743-21274813 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAAACCUUCAGAAGCAAGGUUUUCUGAACUGCCGGGAAACUACAGGACCGAAGCAUCAUGUCCUCAUUCUGCAACAUGCCUCCUGGGUUUUCUUUGGCAGGAAUGCUUCACAUAUGUCCUCAAGGGCCAC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAAACCUUCAGAAGCA-----| U UGAA -- A CCGAAGCAUCAUGUCC
AGGU UUC CUGCC GGGAAACU CAGGA \
UUCG AAG GACGG UCUUUUGG GUCCU U
CACCGGGAACUCCUGUAUACAC^ U ---- UU - CCGUACAACGUCUUAC
. 120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Cfa-Novel-11 is a 5'tailed mirtron. |
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| 3' NTU |
Yes
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-11_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGCCGGGAAACUACAGGACCGA -22
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-11_3p |
| mirBase accession | None |
|---|
| Sequence |
49- CCUCCUGGGUUUUCUUUGGCAG -71
Get sequence
|
|---|
