| MirGeneDB ID | Cfa-Novel-13 |
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| Family name |
CFA-NOVEL-13 (all species) |
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| Seed |
UCAGAGC |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr3: 35437742-35437806 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUCUCUGCCUGUGUCUGAUUCGGUUAGGAUUCAGAGCCCUCCUACAAUGUGAGAAAACCUGAUUACCACUCAUUUGUAGGGCAGCUCUGCGGCCCUGACAGAAGCUCUGGCAUACAGGAGACUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCUCUCUGCCUGUGUCUGA-- G AU -| CC U GAAAACCU
UUC GUUAGG U CAGAGC UCCUACAA GUGA \
AAG CAGUCC G GUCUCG GGGAUGUU UACU G
UUCAGAGGACAUACGGUCUCG A CG C^ AC - CACCAUUA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-13_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUCAGAGCCCUCCUACAAUGUGA -23
Get sequence
|
|---|
| Star sequence |
Cfa-Novel-13_3p* |
| mirBase accession | None |
|---|
| Sequence |
42- AUUUGUAGGGCAGCUCUGCGGCC -65
Get sequence
|
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