MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-15

Family name CFA-NOVEL-15 (all species)
Seed UCAUCAU
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr30: 27388078-27388136 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACCUCUCAGCAAUCAACAGUGAUGGUAACAAUGAUGAUGAUGGUGGUGAAGAUGGGUUGCAUUUUCCUUCAUCAUAGUCAUCAUUGACCUUAUCAUCAUCUUCAUCAUCGUGGUCAUCA
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Structure
        10          20        30        40        50         
ACCUCUCAGCAAUCAACA--|         CAA          G         AUGGGUU 
                    GUGAUGGUAA   UGAUGAUGAU GUGGUGAAG       \
                    UACUACUAUU   GUUACUACUG UACUACUUC       G
ACUACUGGUGCUACUACUUC^         CCA          A         CUUUUAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Novel-15_5p*

mirBase accessionNone
Sequence
0- AUGAUGAUGAUGGUGGUGAAGA -22
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Mature sequence

Cfa-Novel-15_3p

mirBase accessionNone
Sequence
37- UUCAUCAUAGUCAUCAUUGACC -59
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