| MirGeneDB ID | Cfa-Novel-15 |
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| Family name |
CFA-NOVEL-15 (all species) |
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| Seed |
CCAGCAG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chrX: 32945420-32945483 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAAGAGUACCUUAGUAGCCUCCAGCCUUCUGUUCCAAGCAGCUGUCUGCUUCCAGAGUCCUACAGCCCCGAACCAGCAGAGGCUUGGAGCAGGAGGCUGUGGGGAGUGCACUCCAGACACAAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAAAGAGUACCUUAGUAG- -| AG U C CCAGAGUCC
CCUC CAGCCUUCUGUUCCAAGC CUG CUG UU \
GGGG GUCGGAGGACGAGGUUCG GAC GAC AA U
UAACACAGACCUCACGUGA U^ GA - C GCCCCGACA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-15_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGUUCCAAGCAGCUGUCUGCUU -22
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-15_3p |
| mirBase accession | None |
|---|
| Sequence |
42- ACCAGCAGAGGCUUGGAGCAGG -64
Get sequence
|
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