| MirGeneDB ID | Cfa-Novel-2 |
|---|
| Family name |
CFA-NOVEL-2 (all species) |
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| Seed |
CUCCAUU |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr11: 63290160-63290220 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGGGUGGCCUGAUUGGGGUAGGGGUCGGGGAGAGCAUCUUCGGAUGGAGGAGGAAGUUACUUACACACUUCUCCAUUGAACGAUGCUCCCCCUGCACCUACCACCUGGCUGGUCCUGGAUA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGGUGGCCUGAUUGGG---| G C A - G GAAGUUA
GUAGG GU GGGG GAGCAUC UUCG AUGGAGGAG \
CAUCC CG CCCC CUCGUAG AAGU UACCUCUUC C
AUAGGUCCUGGUCGGUCCAC^ A U - C - ACACAUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-2_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGAGCAUCUUCGGAUGGAGGAG -22
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCUCCAUUGAACGAUGCUCCCC -61
Get sequence
|
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