MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-23

Family name CFA-NOVEL-23 (all species)
Seed CCAGCAG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chrX: 32945420-32945483 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAAAGAGUACCUUAGUAGCCUCCAGCCUUCUGUUCCAAGCAGCUGUCUGCUUCCAGAGUCCUACAGCCCCGAACCAGCAGAGGCUUGGAGCAGGAGGCUGUGGGGAGUGCACUCCAGACACAAU
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Structure
        10         20         30        40        50        60  
CAAAGAGUACCUUAGUAG-    -|                 AG   U   C  CCAGAGUCC 
                   CCUC CAGCCUUCUGUUCCAAGC  CUG CUG UU         \
                   GGGG GUCGGAGGACGAGGUUCG  GAC GAC AA         U
UAACACAGACCUCACGUGA    U^                 GA   -   C  GCCCCGACA 
  120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Novel-23_5p*

mirBase accessionNone
Sequence
0- UGUUCCAAGCAGCUGUCUGCUU -22
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Mature sequence

Cfa-Novel-23_3p

mirBase accessionNone
Sequence
42- ACCAGCAGAGGCUUGGAGCAGG -64
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