MirGeneDB 3.0

MirGeneDB ID

Cfa-Novel-3

Family name CFA-NOVEL-3 (all species)
Seed GGGAUCU
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr15: 23529219-23529285 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUACUGGCUCAGCUUUCCUCUAAAUUAUUUGGGAUCUCAGGGUAAAGCUGCAAUUUAAAGCAUGUAGUUGUCAGCUGGACCUUGAAUAUCCUAUAUAAUCUUGGAUGCUUUAUAUAAGGAGUCAAA
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Structure
        10          20         30         40        50        60  
CCUACUGGCUCAGCUUUCC--     -     U      C-|      AA     CAAUUUAAAG 
                     UCUAA AUUAU UGGGAU  UCAGGGU  AGCUG          \
                     AGGUU UAAUA AUCCUA  AGUUCCA  UCGAC          C
AAACUGAGGAAUAUAUUUCGU     C     U      UA^      GG     UGUUGAUGUA 
     120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-3_5p

mirBase accessionNone
Sequence
0- UGGGAUCUCAGGGUAAAGCUG -21
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Co-mature sequence

Cfa-Novel-3_3p

mirBase accessionNone
Sequence
44- GCUGGACCUUGAAUAUCCUAUAU -67
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