MirGeneDB ID | Cfa-Novel-3 |
Family name |
CFA-NOVEL-3 (all species) |
Seed |
GGGAUCU |
Species |
Dog (Canis familiaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
C. familiaris
|
Genome context (canFam3_add) |
chr15: 23529219-23529285 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CCUACUGGCUCAGCUUUCCUCUAAAUUAUUUGGGAUCUCAGGGUAAAGCUGCAAUUUAAAGCAUGUAGUUGUCAGCUGGACCUUGAAUAUCCUAUAUAAUCUUGGAUGCUUUAUAUAAGGAGUCAAA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCUACUGGCUCAGCUUUCC-- - U C-| AA CAAUUUAAAG
UCUAA AUUAU UGGGAU UCAGGGU AGCUG \
AGGUU UAAUA AUCCUA AGUUCCA UCGAC C
AAACUGAGGAAUAUAUUUCGU C U UA^ GG UGUUGAUGUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
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An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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Mature sequence |
Cfa-Novel-3_5p |
mirBase accession | None |
Sequence |
0- UGGGAUCUCAGGGUAAAGCUG -21
Get sequence
|
Co-mature sequence |
Cfa-Novel-3_3p |
mirBase accession | None |
Sequence |
44- GCUGGACCUUGAAUAUCCUAUAU -67
Get sequence
|