MirGeneDB 3.0

MirGeneDB ID

Cfa-Novel-4

Family name CFA-NOVEL-4 (all species)
Seed CAUUCCC
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr16: 20758531-20758592 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAGUGCACUUCCUGCCUUCCGUUCCCUGCUCCAUUCCCCACUCCAGCUAUGUCAGAUAUAGACUCCUAGACUGGCUGGGAGGAGGAAGGUUGCAGUGUUUGGAUCAGGUUCCCGGAAGCCAG
Get precursor sequence
Structure
        10          20        30          40        50        60 
CAGUGCACUUCCUGCCU--    UUCC    U-| A    -  A U       U   AGAUAUA 
                   UCCG    CUGC  CC UUCC CC C CCAGCUA GUC       \
                   AGGU    GACG  GG AAGG GG G GGUCGGU CAG       G
GACCGAAGGCCCUUGGACU    UUGU    UU^ -    A  A -       -   AUCCUCA 
120       110       100        90         80          70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsNo
Tissue expression
 +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-4_5p

mirBase accessionNone
Sequence
0- CCAUUCCCCACUCCAGCUAUGUC -23
Get sequence
Star sequence

Cfa-Novel-4_3p*

mirBase accessionNone
Sequence
40- CUGGCUGGGAGGAGGAAGGUUG -62
Get sequence