MirGeneDB ID | Cfa-Novel-4 |
Family name |
CFA-NOVEL-4 (all species) |
Seed |
CAUUCCC |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
C. familiaris
|
Genome context (canFam3_add) |
chr16: 20758531-20758592 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAGUGCACUUCCUGCCUUCCGUUCCCUGCUCCAUUCCCCACUCCAGCUAUGUCAGAUAUAGACUCCUAGACUGGCUGGGAGGAGGAAGGUUGCAGUGUUUGGAUCAGGUUCCCGGAAGCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAGUGCACUUCCUGCCU-- UUCC U-| A - A U U AGAUAUA
UCCG CUGC CC UUCC CC C CCAGCUA GUC \
AGGU GACG GG AAGG GG G GGUCGGU CAG G
GACCGAAGGCCCUUGGACU UUGU UU^ - A A - - AUCCUCA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cfa-Novel-4_5p |
mirBase accession | None |
Sequence |
0- CCAUUCCCCACUCCAGCUAUGUC -23
Get sequence
|
Star sequence |
Cfa-Novel-4_3p* |
mirBase accession | None |
Sequence |
40- CUGGCUGGGAGGAGGAAGGUUG -62
Get sequence
|