| MirGeneDB ID | Cfa-Novel-4 |
|---|
| Family name |
CFA-NOVEL-4 (all species) |
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| Seed |
CAUUCCC |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr16: 20758531-20758592 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAGUGCACUUCCUGCCUUCCGUUCCCUGCUCCAUUCCCCACUCCAGCUAUGUCAGAUAUAGACUCCUAGACUGGCUGGGAGGAGGAAGGUUGCAGUGUUUGGAUCAGGUUCCCGGAAGCCAG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CAGUGCACUUCCUGCCU-- UUCC U-| A - A U U AGAUAUA
UCCG CUGC CC UUCC CC C CCAGCUA GUC \
AGGU GACG GG AAGG GG G GGUCGGU CAG G
GACCGAAGGCCCUUGGACU UUGU UU^ - A A - - AUCCUCA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-4_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCAUUCCCCACUCCAGCUAUGUC -23
Get sequence
|
|---|
| Star sequence |
Cfa-Novel-4_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- CUGGCUGGGAGGAGGAAGGUUG -62
Get sequence
|
|---|
