MirGeneDB ID | Cfa-Novel-5 |
Family name |
CFA-NOVEL-5 (all species) |
Seed |
AGUGAGG |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
C. familiaris
|
Genome context (canFam3_add) |
chr16: 19323168-19323224 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCCUUUGGAUCUUAAGAGUUUCUGGAGACUAGUGAGGACUUAAGGAAACUCACAUUCUUUGGAGAGUUUUUCCUUGAUUCUCACAGCUAUCUUAUGGUGUCCUCUGUUGUUGGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCCUUUGGAUCUUAAGAGUUUCUG ---| A C -- ACAUU
GAGA CU GUGAGGA UUAAGGAA ACUC C
UUCU GA CACUCUU AGUUCCUU UGAG U
UUUGGUUGUUGUCUCCUGUGGUA-- AUC^ - - UU AGGUU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Cfa-Novel-5 is a 5'tailed mirtron. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cfa-Novel-5_5p |
mirBase accession | None |
Sequence |
0- UAGUGAGGACUUAAGGAAACUCA -23
Get sequence
|
Co-mature sequence |
Cfa-Novel-5_3p |
mirBase accession | None |
Sequence |
35- AGUUUUUCCUUGAUUCUCACAG -57
Get sequence
|