| MirGeneDB ID | Cfa-Novel-5 |
|---|
| Family name |
CFA-NOVEL-5 (all species) |
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| Seed |
UCAGUCU |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr24: 22892649-22892709 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CUUCACUGACAGAGAAAACAGCUGGAGAGGAGUGGCAGUCAGGACCUGGAGCUGAUAAGGGUUUUCUCUUCAGUCUUUGGCCUGCCUCUCCUUGCCAGGUGUGCUGGUCUCCCAUCUACUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CUUCACUGACAGAGAAA-- G AG U -| AC CUGAUAA
ACA CUGG AGGAG GGCA GUCAGG CUGGAG G
UGU GACC UCCUC CCGU CGGUUU GACUUC G
GUCAUCUACCCUCUGGUCG G GU U C^ CU UCUUUUG
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-5_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGGCAGUCAGGACCUGGAGC -22
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-5_3p |
| mirBase accession | None |
|---|
| Sequence |
38- UUCAGUCUUUGGCCUGCCUCUCC -61
Get sequence
|
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