MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-5

Family name CFA-NOVEL-5 (all species)
Seed AGUGAGG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr16: 19323168-19323224 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCCUUUGGAUCUUAAGAGUUUCUGGAGACUAGUGAGGACUUAAGGAAACUCACAUUCUUUGGAGAGUUUUUCCUUGAUUCUCACAGCUAUCUUAUGGUGUCCUCUGUUGUUGGUUU
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Structure
        10        20           30        40          50        
UUCCUUUGGAUCUUAAGAGUUUCUG    ---| A       C        --    ACAUU 
                         GAGA   CU GUGAGGA UUAAGGAA  ACUC     C
                         UUCU   GA CACUCUU AGUUCCUU  UGAG     U
UUUGGUUGUUGUCUCCUGUGGUA--    AUC^ -       -        UU    AGGUU 
     110       100          90         80         70        60
Deep sequencing
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CommentCfa-Novel-5 is a 5'tailed mirtron.
3' NTU Yes
MotifsNo
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-5_5p

mirBase accessionNone
Sequence
0- UAGUGAGGACUUAAGGAAACUCA -23
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Co-mature sequence

Cfa-Novel-5_3p

mirBase accessionNone
Sequence
35- AGUUUUUCCUUGAUUCUCACAG -57
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