MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-8

Family name CFA-NOVEL-8 (all species)
Seed GGGCAGG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr20: 50060114-50060170 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAGCUGCUGGGGGUGGAGGUGGGGGUGUGAUGGGCAGGGGGUGGCACCCGGGCUGGGCCCAGGGCCUGAUGCCACCUCCCACCCUAGAACAUCUCAUCCAACGUGCUGGAGGAGUCU
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Structure
        10         20        30         40        50        
AAGCUGCUGGGGGUGGA-  UG       GAU-|  CA          CC     UGGG 
                  GG  GGGGUGU    GGG  GGGGGUGGCA  CGGGC    C
                  CC  CUCUACA    CCC  CCUCCACCGU  GUCCG    C
UCUGAGGAGGUCGUGCAA  UA       AGAU^  AC          A-     GGAC 
     110       100        90        80        70         60
Deep sequencing
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CommentCfa-Novel-8 is a 5'tailed mirtron.
3' NTU Yes
MotifsNo
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-8_5p

mirBase accessionNone
Sequence
0- UGGGCAGGGGGUGGCACCCGGGC -23
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Co-mature sequence

Cfa-Novel-8_3p

mirBase accessionNone
Sequence
35- CUGAUGCCACCUCCCACCCUAG -57
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