MirGeneDB ID | Cfa-Novel-8 |
Family name |
CFA-NOVEL-8 (all species) |
Seed |
GGGCAGG |
Species |
Dog (Canis familiaris) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. familiaris
|
Node of Origin (family) |
C. familiaris
|
Genome context (canFam3_add) |
chr20: 50060114-50060170 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAGCUGCUGGGGGUGGAGGUGGGGGUGUGAUGGGCAGGGGGUGGCACCCGGGCUGGGCCCAGGGCCUGAUGCCACCUCCCACCCUAGAACAUCUCAUCCAACGUGCUGGAGGAGUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
AAGCUGCUGGGGGUGGA- UG GAU-| CA CC UGGG
GG GGGGUGU GGG GGGGGUGGCA CGGGC C
CC CUCUACA CCC CCUCCACCGU GUCCG C
UCUGAGGAGGUCGUGCAA UA AGAU^ AC A- GGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | Cfa-Novel-8 is a 5'tailed mirtron. |
3' NTU |
Yes
|
Motifs | No |
Tissue expression
|
Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cfa-Novel-8_5p |
mirBase accession | None |
Sequence |
0- UGGGCAGGGGGUGGCACCCGGGC -23
Get sequence
|
Co-mature sequence |
Cfa-Novel-8_3p |
mirBase accession | None |
Sequence |
35- CUGAUGCCACCUCCCACCCUAG -57
Get sequence
|