| MirGeneDB ID | Cfa-Novel-8 |
|---|
| Family name |
CFA-NOVEL-8 (all species) |
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| Seed |
AUCUUGA |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chr3: 89188779-89188838 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUCACAGGUAUGAGAUAGGCAUCGUCCGACAUCGGGAUGCUGUUUAGAUUGUGCAAGAUCUUCUCACAUCUUGACAGGCAUCCUGCUAGUCUGCUGCUGCUGCUCCGGCUUUCUGAGCAU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCACAGGUAUGAGAUA-- U UCC AU- -| U U CAAGA
GGCA CG GAC CGGGAUG CUGUU AGAU GUG \
UCGU GU CUG GUCCUAC GACAG UCUA CAC U
UACGAGUCUUUCGGCCUCG C CGU AUC G^ U - UCUUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-8_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AUCGGGAUGCUGUUUAGAUUGUG -23
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-8_3p |
| mirBase accession | None |
|---|
| Sequence |
36- CAUCUUGACAGGCAUCCUGCUAGU -60
Get sequence
|
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