| MirGeneDB ID | Cin-Mir-1495 |
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| Family name |
MIR-1495 (all species) |
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| Seed |
GUGUAAU |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
6: 607126-607179 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUCAUCGUAAAGCAUCAAUUCUACGCCGGCCGCUCCAUAUAUGUCACACAUUCUGUUUUGAAGUGUAAUGUCUAUGGAAGCAGUGGGCGUCAGAAUAAUAUCAACUAUUUAAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
AUCAUCGUAAAGCAUCA- - G C -| U C A UG
AUUCU ACGCC GC GC UCCAUA AUGU ACAC UUC U
UAAGA UGCGG UG CG AGGUAU UGUA UGUG AAG U
AGAAUUUAUCAACUAUAA C G A A^ C A - UU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-1495_5p* |
| mirBase accession | None |
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| Sequence |
0- CGCUCCAUAUAUGUCACACAUUC -23
Get sequence
|
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| Mature sequence |
Cin-Mir-1495_3p |
| mirBase accession | None |
|---|
| Sequence |
31- AGUGUAAUGUCUAUGGAAGCAGU -54
Get sequence
|
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