MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-1497

Family name MIR-1497 (all species)
Seed UGAAGAA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-1497
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
9: 5852709-5852773 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGAGUUGCCGGAAUCUGGCUGUUAGCGCAACCACUUGUGAAUCUCCAACACUCGGCUUUGUCCACGACUUUGUUGAAGAAUUGCAGGUGGUAGGUGCUUUCAAGCCGUAUCUACAUCAUCCCGU
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Structure
        10         20         30         40        50        60 
AUGAGUUGCCGGAAUCU-   -  UU     A-|       UG A   C     CUCGGCUUU 
                  GGC UG  AGCGC  ACCACUUG  A UCU CAACA         G
                  CCG AC  UCGUG  UGGUGGAC  U AGA GUUGU         U
UGCCCUACUACAUCUAUG   A  UU     GA^       GU A   A     UUCAGCACC 
   120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Star sequence

Cin-Mir-1497_5p*

mirBase accessionMIMAT0015246
Sequence
0- ACCACUUGUGAAUCUCCAACA -21
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Mature sequence

Cin-Mir-1497_3p

mirBase accessionMIMAT0006068
Sequence
43- UUGAAGAAUUGCAGGUGGUAGG -65
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