| MirGeneDB ID | Cin-Mir-1497 |
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| Family name |
MIR-1497 (all species) |
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| Seed |
UGAAGAA |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-1497
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
9: 5852709-5852773 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AUGAGUUGCCGGAAUCUGGCUGUUAGCGCAACCACUUGUGAAUCUCCAACACUCGGCUUUGUCCACGACUUUGUUGAAGAAUUGCAGGUGGUAGGUGCUUUCAAGCCGUAUCUACAUCAUCCCGU
Get precursor sequence
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| Structure | 10 20 30 40 50 60
AUGAGUUGCCGGAAUCU- - UU A-| UG A C CUCGGCUUU
GGC UG AGCGC ACCACUUG A UCU CAACA G
CCG AC UCGUG UGGUGGAC U AGA GUUGU U
UGCCCUACUACAUCUAUG A UU GA^ GU A A UUCAGCACC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Cr |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-1497_5p* |
| mirBase accession | MIMAT0015246 |
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| Sequence |
0- ACCACUUGUGAAUCUCCAACA -21
Get sequence
|
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| Mature sequence |
Cin-Mir-1497_3p |
| mirBase accession | MIMAT0006068 |
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| Sequence |
43- UUGAAGAAUUGCAGGUGGUAGG -65
Get sequence
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