MirGeneDB ID | Cin-Mir-1497 |
Family name |
MIR-1497 (all species) |
Seed |
UGAAGAA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-1497
|
Paralogues |
|
Orthologues |
|
Node of Origin (locus) |
C. intestinalis
|
Node of Origin (family) |
C. intestinalis
|
Genome context (ci3) |
9: 5852709-5852773 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGAGUUGCCGGAAUCUGGCUGUUAGCGCAACCACUUGUGAAUCUCCAACACUCGGCUUUGUCCACGACUUUGUUGAAGAAUUGCAGGUGGUAGGUGCUUUCAAGCCGUAUCUACAUCAUCCCGU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGAGUUGCCGGAAUCU- - UU A-| UG A C CUCGGCUUU
GGC UG AGCGC ACCACUUG A UCU CAACA G
CCG AC UCGUG UGGUGGAC U AGA GUUGU U
UGCCCUACUACAUCUAUG A UU GA^ GU A A UUCAGCACC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Star sequence |
Cin-Mir-1497_5p* |
mirBase accession | MIMAT0015246 |
Sequence |
0- ACCACUUGUGAAUCUCCAACA -21
Get sequence
|
Mature sequence |
Cin-Mir-1497_3p |
mirBase accession | MIMAT0006068 |
Sequence |
43- UUGAAGAAUUGCAGGUGGUAGG -65
Get sequence
|