| MirGeneDB ID | Cin-Mir-4013-P1 |
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| Family name |
MIR-4013 (all species) |
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| Seed |
GACUUGU |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4013a
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| Paralogues |
Cin-Mir-4013-P2
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000174.1: 447280-447335 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCUUUUGCAUUAAUUGGUCUACGUGAUUACAGACUUGUAAUAGCAGCAUGCGUCGGUUAAACCGUAGGCUGCUAAUGCAAGCCCGUAUUCACUGAAGAAAUAUCUGCCACGUAUAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCUUUUGCAUUAAUUGG- A -| U AGA A A UCGG
UCU C GUGA UAC CUUGUA UAGCAGC UGCG U
AGA G CACU AUG GAACGU AUCGUCG AUGC U
AAUAUGCACCGUCUAUAA A U^ U CCC A G CAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4013-P1_5p |
| mirBase accession | MIMAT0016514 |
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| Sequence |
0- AGACUUGUAAUAGCAGCAUGCG -22
Get sequence
|
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| Co-mature sequence |
Cin-Mir-4013-P1_3p |
| mirBase accession | MIMAT0016515 |
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| Sequence |
34- UAGGCUGCUAAUGCAAGCCCGU -56
Get sequence
|
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