MirGeneDB ID | Cin-Mir-4030 |
Family name |
MIR-4030 (all species) |
Seed |
AAGUGCA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4030
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
3: 4477480-4477534 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUGUCAGAACAAACUGAAGCAGUUGGUGCAAAGUGCAACUUUGAUAGUGUGUAACUCUCCACGCUAUCAGAUGUGCUCUUACACGCUCGCUGCUUACUUUCAACUUAUGAAGAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUGUCAGAACAAACUG-- U CA-| U AC UAA
AAGCAGU GGUG AAG GCA UUUGAUAGUGUG C
UUCGUCG UCGC UUC CGU AGACUAUCGCAC U
AAGAAGUAUUCAACUUUCA C ACA^ U GU CUC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4030_5p |
mirBase accession | MIMAT0016549 |
Sequence |
0- AAAGUGCAACUUUGAUAGUGUG -22
Get sequence
|
Star sequence |
Cin-Mir-4030_3p* |
mirBase accession | MIMAT0016550 |
Sequence |
32- CGCUAUCAGAUGUGCUCUUACAC -55
Get sequence
|