MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-4030

Family name MIR-4030 (all species)
Seed AAGUGCA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4030
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
3: 4477480-4477534 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUGUCAGAACAAACUGAAGCAGUUGGUGCAAAGUGCAACUUUGAUAGUGUGUAACUCUCCACGCUAUCAGAUGUGCUCUUACACGCUCGCUGCUUACUUUCAACUUAUGAAGAA
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Structure
        10          20        30         40        50      
CCUGUCAGAACAAACUG--       U    CA-|  U   AC            UAA 
                   AAGCAGU GGUG   AAG GCA  UUUGAUAGUGUG   C
                   UUCGUCG UCGC   UUC CGU  AGACUAUCGCAC   U
AAGAAGUAUUCAACUUUCA       C    ACA^  U   GU            CUC 
   110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4030_5p

mirBase accessionMIMAT0016549
Sequence
0- AAAGUGCAACUUUGAUAGUGUG -22
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Star sequence

Cin-Mir-4030_3p*

mirBase accessionMIMAT0016550
Sequence
32- CGCUAUCAGAUGUGCUCUUACAC -55
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