| MirGeneDB ID | Cin-Mir-4040 |
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| Family name |
MIR-4040 (all species) |
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| Seed |
CGUCUUU |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4040
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
11: 4184663-4184717 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCGAAAAUCGUGACGUUUUCAAUCCAGGGCUCGUCUUUCUGCAUAUGGUUGUUAUGUGUCCAACAACCAGAUCAGAAAGUCGAUUUCUGUUUUGAAAUUUUCAUCUGUCGUGGCG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCGAAAAUCGUGACGUU--| UC C U C A AUG
UUCAA CAGGG UCG CUUUCUG AU UGGUUGUU U
AAGUU GUCUU AGC GAAAGAC UA ACCAACAA G
GCGGUGCUGUCUACUUUUA^ UU U U - G CCU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4040_5p |
| mirBase accession | MIMAT0016569 |
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| Sequence |
0- UCGUCUUUCUGCAUAUGGUUGUU -23
Get sequence
|
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| Star sequence |
Cin-Mir-4040_3p* |
| mirBase accession | MIMAT0016570 |
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| Sequence |
33- CAACCAGAUCAGAAAGUCGAUU -55
Get sequence
|
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