| MirGeneDB ID | Cin-Mir-4044 |
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| Family name |
MIR-4044 (all species) |
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| Seed |
GAAAUAG |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4044
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000127.1: 131957-132015 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAUGCUGUUUUCAAAUGCGGUUGUAGCUGAGUUGGUAGACUGAUUUCAGUUCCCUUUUCUUUCGACUGAAAUAGGUCUGCUAACUAAUGUUACAAUCAGCAUUAUCUGCGGGAAUCAU
Get precursor sequence
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| Structure | 10 20 30 40 50
GGAUGCUGUUUUCAAAU- - UG-| G UCCCUU
GC GGUUGUAGC AGUUGGUAGACU AUUUCAGU U
CG CUAACAUUG UCAAUCGUCUGG UAAAGUCA U
UACUAAGGGCGUCUAUUA A UAA^ A GCUUUC
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-4044_5p* |
| mirBase accession | MIMAT0016577 |
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| Sequence |
0- AGUUGGUAGACUGAUUUCAGU -21
Get sequence
|
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| Mature sequence |
Cin-Mir-4044_3p |
| mirBase accession | MIMAT0016578 |
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| Sequence |
37- UGAAAUAGGUCUGCUAACUAAU -59
Get sequence
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