MirGeneDB ID | Cin-Mir-4050 |
Family name |
MIR-4050 (all species) |
Seed |
AGGUAAA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4050
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
5: 3019437-3019494 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUCUAAGAAUUUGUAAUAGUGGUUUGGCAUUAGGUAAAUCAAAUUUCAGGCUGUUAGUGAGACCAACAGCUUGAAUUUGUUGCCUACAGACACUCCACUGCUAUCUACUGAGGUUUCA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUCUAAGAAUUUGUAAU--| UU GCAU AU U AGUG
AGUGG UG UAGGUAA CAAAUU CAGGCUGUU \
UCACC AC AUCCGUU GUUUAA GUUCGACAA A
ACUUUGGAGUCAUCUAUCG^ UC AGAC -- - CCAG
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4050_5p |
mirBase accession | MIMAT0016589 |
Sequence |
0- UAGGUAAAUCAAAUUUCAGGCUGUU -25
Get sequence
|
Star sequence |
Cin-Mir-4050_3p* |
mirBase accession | MIMAT0016590 |
Sequence |
36- CAGCUUGAAUUUGUUGCCUACA -58
Get sequence
|