| MirGeneDB ID | Cin-Mir-4053 |
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| Family name |
MIR-4053 (all species) |
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| Seed |
AGUACGU |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4053
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
HT000098.1: 146779-146840 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACUUUUCCGCGCUGCAGUCUUUCGUUUACUCGCCGGGGUAUGACGUCGUACUGUGACGUAGGUUGCGCAGUAGUACGUCGUUCUCCGGACGGUAUUAGGAAGAACUAUCAUCAAGGACCCCC
Get precursor sequence
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| Structure | 10 20 30 40 50 60
ACUUUUCCGCGCUGCAG--| GUU U - U CG GUGACGU
UCUUUC UAC CG CCGGGG AUGACGU UACU A
AGAAGG AUG GC GGCCUC UGCUGCA AUGA G
CCCCCAGGAACUACUAUCA^ AUU - A U UG CGCGUUG
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Star sequence |
Cin-Mir-4053_5p* |
| mirBase accession | MIMAT0016595 |
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| Sequence |
0- CGCCGGGGUAUGACGUCGUACU -22
Get sequence
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| Mature sequence |
Cin-Mir-4053_3p |
| mirBase accession | MIMAT0016596 |
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| Sequence |
40- UAGUACGUCGUUCUCCGGACGG -62
Get sequence
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