MirGeneDB ID | Cin-Mir-4071 |
Family name |
MIR-4071 (all species) |
Seed |
UUGCUCU |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4071
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
9: 4379240-4379291 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
AUACAUAAAGUUAUUAUAGAGAUAGUGGUUCUUGCUCUUACUGUGACAUCCCUUGCCAAGGGAUAUCCAGACAGGGCAAAAACUGCUCUGCUCUUUUUUCAUCUGAAGCUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUACAUAAAGUUAUUAU- AU-| UG C UA U C UG
AGAG AG GUU UUGCUCU CUG GA AUCCCU \
UCUC UC CAA AACGGGA GAC CU UAGGGA C
AUUCGAAGUCUACUUUUU GUC^ GU A CA - A AC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4071_5p |
mirBase accession | MIMAT0016630 |
Sequence |
0- CUUGCUCUUACUGUGACAUCCCU -23
Get sequence
|
Star sequence |
Cin-Mir-4071_3p* |
mirBase accession | MIMAT0016631 |
Sequence |
30- GGAUAUCCAGACAGGGCAAAAA -52
Get sequence
|