MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-4071

Family name MIR-4071 (all species)
Seed UUGCUCU
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4071
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
9: 4379240-4379291 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUACAUAAAGUUAUUAUAGAGAUAGUGGUUCUUGCUCUUACUGUGACAUCCCUUGCCAAGGGAUAUCCAGACAGGGCAAAAACUGCUCUGCUCUUUUUUCAUCUGAAGCUUA
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Structure
        10         20         30        40        50      
AUACAUAAAGUUAUUAU-    AU-| UG   C       UA   U  C      UG 
                  AGAG   AG  GUU UUGCUCU  CUG GA AUCCCU  \
                  UCUC   UC  CAA AACGGGA  GAC CU UAGGGA  C
AUUCGAAGUCUACUUUUU    GUC^ GU   A       CA   -  A      AC 
110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4071_5p

mirBase accessionMIMAT0016630
Sequence
0- CUUGCUCUUACUGUGACAUCCCU -23
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Star sequence

Cin-Mir-4071_3p*

mirBase accessionMIMAT0016631
Sequence
30- GGAUAUCCAGACAGGGCAAAAA -52
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