| MirGeneDB ID | Cin-Mir-4076 |
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| Family name |
MIR-4076 (all species) |
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| Seed |
AACGAGU |
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| Species |
Sea Squirt (Ciona intestinalis) |
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| MiRBase ID |
cin-mir-4076
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. intestinalis
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| Node of Origin (family) |
C. intestinalis
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Genome context
(ci3) |
1: 3976074-3976131 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAAGAAAUAUAAACUCCGCCAAAAAAUCUUCAACGAGUCCCUGAAAAAUCCCGACAUACAAAUUCGGGUGUUUCAGGGAAUCGUUACAGAAAUGGCGAGAACUUUCAUCUGCAAGGAC
Get precursor sequence
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| Structure | 10 20 30 40 50
CAAGAAAUAUAAACUCC-----| AAAAA UC G AAU ACAUA
GCCA UCU AACGA UCCCUGAAA CCCG \
CGGU AGA UUGCU AGGGACUUU GGGC C
CAGGAACGUCUACUUUCAAGAG^ AA--- CA A GU- UUAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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| Mature sequence |
Cin-Mir-4076_5p |
| mirBase accession | MIMAT0016640 |
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| Sequence |
0- CAACGAGUCCCUGAAAAAUCCCG -23
Get sequence
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| Star sequence |
Cin-Mir-4076_3p* |
| mirBase accession | MIMAT0016641 |
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| Sequence |
36- GGUGUUUCAGGGAAUCGUUACA -58
Get sequence
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