MirGeneDB 3.0

MirGeneDB ID

Cin-Mir-4081

Family name MIR-4081 (all species)
Seed AGUUCAA
Species Sea Squirt (Ciona intestinalis)
MiRBase ID cin-mir-4081
Paralogues
Orthologues
Node of Origin (locus) C. intestinalis
Node of Origin (family) C. intestinalis
Genome context
(ci3)
2: 6103234-6103286 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUUGAUAAAUAUAAAUUCUUGCUUUUGAGAUAGUUCAACUCCAUACAGAAUUGUGGUCUCAGUUCUGUAUAAGUUGAGCUGAAUCAAAAGCAGAACAAUCGACGUCGCUGUCC
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Structure
        10          20        30        40        50      
UUUGAUAAAUAUAAAUUC--|         GA          CC           UG 
                    UUGCUUUUGA  UAGUUCAACU  AUACAGAAUUG  G
                    GACGAAAACU  GUCGAGUUGA  UAUGUCUUGAC  U
CCUGUCGCUGCAGCUAACAA^         AA          A-           UC 
 110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
C- C- C- C- C- C- C- C- C- C- Ga La La
Mature sequence

Cin-Mir-4081_5p

mirBase accessionMIMAT0016651
Sequence
0- UAGUUCAACUCCAUACAGAAUUG -23
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Star sequence

Cin-Mir-4081_3p*

mirBase accessionMIMAT0016652
Sequence
31- GUUCUGUAUAAGUUGAGCUGAA -53
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