MirGeneDB ID | Cin-Mir-4081 |
Family name |
MIR-4081 (all species) |
Seed |
AGUUCAA |
Species |
Sea Squirt (Ciona intestinalis) |
MiRBase ID |
cin-mir-4081
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
C. intestinalis
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Node of Origin (family) |
C. intestinalis
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Genome context (ci3) |
2: 6103234-6103286 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UUUGAUAAAUAUAAAUUCUUGCUUUUGAGAUAGUUCAACUCCAUACAGAAUUGUGGUCUCAGUUCUGUAUAAGUUGAGCUGAAUCAAAAGCAGAACAAUCGACGUCGCUGUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
UUUGAUAAAUAUAAAUUC--| GA CC UG
UUGCUUUUGA UAGUUCAACU AUACAGAAUUG G
GACGAAAACU GUCGAGUUGA UAUGUCUUGAC U
CCUGUCGCUGCAGCUAACAA^ AA A- UC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
C- |
Ga |
La |
La |
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Mature sequence |
Cin-Mir-4081_5p |
mirBase accession | MIMAT0016651 |
Sequence |
0- UAGUUCAACUCCAUACAGAAUUG -23
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|
Star sequence |
Cin-Mir-4081_3p* |
mirBase accession | MIMAT0016652 |
Sequence |
31- GUUCUGUAUAAGUUGAGCUGAA -53
Get sequence
|