| MirGeneDB ID | Cja-Novel-1 |
|---|---|
| Family name | CJA-NOVEL-1 (all species) |
| Seed | ACCCCAA |
| Species | White-tufted-ear marmoset (Callithrix jacchus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | C. jacchus |
| Node of Origin (family) | C. jacchus |
| Genome context (GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 15314046-15314103 [+] UCSC Ensembl |
| Precursor (pre-Mir +30nt flank) | UCAAAGUAUUGGAGUUACAGGCAUGAGUCUCACCCCAAAGCACUCACAGUUUGUUUUUUUAAAUGGAACUUGAGUGCUUUGGGGUAAGACCUGCCUAUUGCAUUUCACCUUAUAGUUUGet precursor sequence |
| Structure | 10 20 30 40 50 UCAAAGUAUUGGAGUUAC----| UGA C C UGUUUUU AGGCA GUCU ACCCCAAAGCACUCA AGUU \ UCCGU CAGA UGGGGUUUCGUGAGU UCAA U UUUGAUAUUCCACUUUACGUUA^ C-- A - GGUAAAU 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Cja-Novel-1_5p |
| mirBase accession | None |
| Sequence |
0- CACCCCAAAGCACUCACAGUU -21
Get sequence
|
| Star sequence | Cja-Novel-1_3p* |
| mirBase accession | None |
| Sequence |
38- CUUGAGUGCUUUGGGGUAAG -58
Get sequence
|
