| MirGeneDB ID | Cja-Novel-1 |
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| Family name |
CJA-NOVEL-1 (all species) |
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| Seed |
ACCCCAA |
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| Species |
White-tufted-ear marmoset (Callithrix jacchus) |
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| MiRBase ID |
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. jacchus
|
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| Node of Origin (family) |
C. jacchus
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Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic) |
CM021926.1: 15314046-15314103 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAAAGUAUUGGAGUUACAGGCAUGAGUCUCACCCCAAAGCACUCACAGUUUGUUUUUUUAAAUGGAACUUGAGUGCUUUGGGGUAAGACCUGCCUAUUGCAUUUCACCUUAUAGUUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UCAAAGUAUUGGAGUUAC----| UGA C C UGUUUUU
AGGCA GUCU ACCCCAAAGCACUCA AGUU \
UCCGU CAGA UGGGGUUUCGUGAGU UCAA U
UUUGAUAUUCCACUUUACGUUA^ C-- A - GGUAAAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Cja-Novel-1_5p |
| mirBase accession | None |
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| Sequence |
0- CACCCCAAAGCACUCACAGUU -21
Get sequence
|
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| Star sequence |
Cja-Novel-1_3p* |
| mirBase accession | None |
|---|
| Sequence |
38- CUUGAGUGCUUUGGGGUAAG -58
Get sequence
|
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