| MirGeneDB ID | Cli-Mir-1552 |
|---|
| Family name |
MIR-1552 (all species) |
|---|
| Seed |
UAGUGCG |
|---|
| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-1552
|
|---|
| Paralogues |
|
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| Orthologues |
Gga-Mir-1552
Tgu-Mir-1552
|
|---|
| Node of Origin (locus) |
Neognathae
|
|---|
| Node of Origin (family) |
Neognathae
|
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Genome context
(colLiv2) |
scaffold160: 1494072-1494129 [-]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGCAGCUUAGUGCUUGUCUACACGGGGAAGUUAGUGCGCGGUAAGCUAGGGUGUGAGUUUGCAGCACGCUAGCUGCUCUGCACUAACUCCCCCUGUGGAUGCUGAGUGUGCACUAAGA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGCAGCUUAGUGCUUGU---| C A C A G UGAGU
CUACA GGGGA GUUAGUGCG GGUA GCUAG GUG \
GGUGU CCCCU CAAUCACGU UCGU CGAUC CAC U
AGAAUCACGUGUGAGUCGUA^ C - C - G GACGU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
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Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-1552_5p |
| mirBase accession | MIMAT0038683 |
|---|
| Sequence |
0- UUAGUGCGCGGUAAGCUAGGGUG -23
Get sequence
|
|---|
| Co-mature sequence |
Cli-Mir-1552_3p |
| mirBase accession | MIMAT0038684 |
|---|
| Sequence |
36- CGCUAGCUGCUCUGCACUAACU -58
Get sequence
|
|---|
