| MirGeneDB ID | Cli-Mir-9625 |
|---|
| Family name |
MIR-9625 (all species) |
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| Seed |
UGUCGGA |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-9625
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. livia
|
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| Node of Origin (family) |
C. livia
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Genome context
(colLiv2) |
scaffold693: 1982645-1982702 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CUCAGCCAGCAGCUGUUGAGAGCAUCGGAGCUGUCGGAGCCGAUGUUCUAGCUGGAAUGAAAAACGGCUGACGCUGGCACCGAGAGCCCUGUGGCUUCCAAAGACACCCUGGGACCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUCAGCCAGCAGCUGUU--|AG AU A G A A CU GGAAU
G AGC CGG GCU UCGG GCCG UGUU AGCU G
C UCG GUC CGA AGCC CGGU GCAG UCGG A
GACCAGGGUCCCACAGAAA^CU GU C G A C -- CAAAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Cli-Mir-9625_5p |
| mirBase accession | MIMAT0038741 |
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| Sequence |
0- CUGUCGGAGCCGAUGUUCUAGCU -23
Get sequence
|
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| Star sequence |
Cli-Mir-9625_3p* |
| mirBase accession | MIMAT0038742 |
|---|
| Sequence |
37- CUGACGCUGGCACCGAGAGCC -58
Get sequence
|
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