| MirGeneDB ID | Cli-Mir-9640 |
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| Family name |
MIR-9640 (all species) |
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| Seed |
CAGAUGG |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-9640
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. livia
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| Node of Origin (family) |
C. livia
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Genome context
(colLiv2) |
scaffold684: 20874-20935 [+]
|
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Precursor
(pre-Mir +30nt flank) |
CAGUUUGAUUACACUCCAGCACGGGCGGCAGAGCCUCGCGCUGACUCUGAAGGUUCUGGUAACUCGACUUCAGAUGGCAGAGCUGAGGCUGCGCCGCUCGCUCGGUGACGGCGAAUUGCGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CAGUUUGAUUACACUCCAGCA- AG - G AC-| GUUCUGG
CGGGCGGC AGCCUC GC CUG UCUGAAG \
GCUCGCCG UCGGAG CG GAC AGACUUC U
ACGCGUUAAGCGGCAGUGGCUC CG U A GGU^ AGCUCAA
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Star sequence |
Cli-Mir-9640_5p* |
| mirBase accession | MIMAT0038773 |
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| Sequence |
0- GAGCCUCGCGCUGACUCUGAAG -22
Get sequence
|
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| Mature sequence |
Cli-Mir-9640_3p |
| mirBase accession | MIMAT0038774 |
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| Sequence |
39- UCAGAUGGCAGAGCUGAGGCUGC -62
Get sequence
|
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