| MirGeneDB ID | Cli-Mir-9644 |
|---|
| Family name |
MIR-9644 (all species) |
|---|
| Seed |
GGUGUGG |
|---|
| Species |
Rock pigeon (Columba livia) |
|---|
| MiRBase ID |
cli-mir-9644
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. livia
|
|---|
| Node of Origin (family) |
C. livia
|
|---|
Genome context
(colLiv2) |
scaffold101: 12247024-12247081 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
GUUCAAACACUGGAACUGGUUGCCCAGAGGUGGUGUGGGGUUUGGAUCUCAGUUAAAAUCUCACUGGAGACCAUACUGCACAGCCUUCUCUAGGUGACCCUACUUGAGCAAAACAGUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUUCAAACACUGGAACU-- UG C U -| G U A - UAAA
GGU CC AGAGG GG UGUG GGU UGG UCUC AGU \
CCA GG UCUCU CC ACAC UCA ACC AGAG UCA A
UUGACAAAACGAGUUCAUC GU A U G^ G U - G CUCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-9644_5p |
| mirBase accession | MIMAT0038781 |
|---|
| Sequence |
0- UGGUGUGGGGUUUGGAUCUCAGU -23
Get sequence
|
|---|
| Star sequence |
Cli-Mir-9644_3p* |
| mirBase accession | MIMAT0038782 |
|---|
| Sequence |
35- GGAGACCAUACUGCACAGCCUUC -58
Get sequence
|
|---|
