| MirGeneDB ID | Cli-Mir-9648 |
|---|
| Family name |
MIR-9648 (all species) |
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| Seed |
AUGCCAU |
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| Species |
Rock pigeon (Columba livia) |
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| MiRBase ID |
cli-mir-9648
|
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. livia
|
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| Node of Origin (family) |
C. livia
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Genome context
(colLiv2) |
scaffold226: 298722-298780 [-]
|
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Precursor
(pre-Mir +30nt flank) |
CUAAGAGAAUAUAUCUAUGAGAGGCCAUCUCAUGCCAUUAAUUUCUAAGCAGUCAAUGAGGAAUUCUGCUGUAGAAUUAAUGGCAAAAUAUGGCCCACUGUCUUGGGCAAAUAAAUGUU
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CUAAGAGAAUAUAUCUAUGAGA--| CUCA U - GUCAAUG
GGCCAU UGCCAUUAAUU CUA AGCA \
CCGGUA ACGGUAAUUAA GAU UCGU A
UUGUAAAUAAACGGGUUCUGUCAC^ UAAA - G CUUAAGG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
|
|
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| Mature sequence |
Cli-Mir-9648_5p |
| mirBase accession | MIMAT0038789 |
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| Sequence |
0- CAUGCCAUUAAUUUCUAAGCA -21
Get sequence
|
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| Co-mature sequence |
Cli-Mir-9648_3p |
| mirBase accession | MIMAT0038790 |
|---|
| Sequence |
38- CUGUAGAAUUAAUGGCAAAAU -59
Get sequence
|
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