MirGeneDB ID | Cmi-Mir-203-P6-v1 |
Family name |
MIR-203 (all species) |
Seed |
UGAAAUG |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
|
Paralogues |
Cmi-Mir-203-P5-v1
Cmi-Mir-203-P5-v2
Cmi-Mir-203-P6-v2
|
Orthologues |
Lch-Mir-203
Spt-Mir-203
|
Node of Origin (locus) |
C. milii
|
Node of Origin (family) |
Vertebrata
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Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635863.1: 10840677-10840736 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAAUGUAUUGUGUGAAAGUCCUUUGGGUGCAGUGGUUUUCAACAGUUCAACAGUUCUUUAUUAACAUUGUGAAAUGUUUAGGACCACUUGAUCCAAAGAACAAUUACAUCAAACACACCU
Get precursor sequence
|
Structure | 10 20 30 40 50
CAAUGUAUUGUGUGAAA--| C GC C G A UUCUUU
GU CUUUGGGU AGUGGUUUU AACA UUCA CAG \
CA GAAACCUA UCACCAGGA UUGU AAGU GUU A
UCCACACAAACUACAUUAA^ A GU U A - ACAAUU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Star sequence |
Cmi-Mir-203-P6-v1_5p* |
mirBase accession | None |
Sequence |
0- AGUGGUUUUCAACAGUUCAACAG -23
Get sequence
|
Mature sequence |
Cmi-Mir-203-P6-v1_3p |
mirBase accession | None |
Sequence |
38- GUGAAAUGUUUAGGACCACUUG -60
Get sequence
|