| MirGeneDB ID | Cmi-Novel-1 |
|---|
| Family name |
CHO-NOVEL-1 (all species) |
|---|
| Seed |
UUCUAAU |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
Sto-Novel-1
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| Node of Origin (locus) |
Chondrichthyes
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| Node of Origin (family) |
Chondrichthyes
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Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI636068.1: 74318-74371 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUCUGGCUACUCACACAAUGUCAUAGCACCAGUGUGAUAACACUUAGAAGGGAGCUAUUUAUCAUUCUAAUUGUCAUCACUCAGGUGUUGCGUGUGACUCCUGAACCACUCACC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UUCUGGCUACUCACACA----| CAU AGU A C G AGCU
AUGU AGCACC GUGAU ACA UUAGAA GG \
UGCG UUGUGG CACUA UGU AAUCUU CU A
CCACUCACCAAGUCCUCAGUG^ --- ACU C U A AUUU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | No |
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Tissue expression
|
| Bl |
Br |
Ey |
Gi |
Gl |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Sk |
Sp |
Te |
Ut |
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| Star sequence |
Cmi-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- AGUGUGAUAACACUUAGAAGGG -22
Get sequence
|
|---|
| Mature sequence |
Cmi-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
33- AUUCUAAUUGUCAUCACUCAG -54
Get sequence
|
|---|
