| MirGeneDB ID | Cmi-Novel-1 |
|---|
| Family name |
CMI-NOVEL-1 (all species) |
|---|
| Seed |
UUACAAA |
|---|
| Species |
Australian ghostshark (Callorhinchus milii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
|---|
| Orthologues |
|
|---|
| Node of Origin (locus) |
C. milii
|
|---|
| Node of Origin (family) |
C. milii
|
|---|
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635869.1: 2046124-2046184 [-]
UCSC
Ensembl
|
|---|
Precursor
(pre-Mir +30nt flank) |
GGGAAGGUGCUGGUUUGCUGCUGCUGAAUGUUGUUAGUGUGCCUUGUAAAUAUGUGAUUCUUAAACUUGUUUACAAAGUGCACUAGAGCCAUCUAGUGGCAGCACAAGAUCAUCACACAGU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGAAGGUGCUGGUUUG--| UG A UUG UG C UGUGAUU
CUGC CUG AUG UUAGUG C UUGUAAAUA \
GACG GAU UAC GAUCAC G AACAUUUGU C
UGACACACUACUAGAACAC^ GU C CGA GU A UCAAAUU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UGUG in loop |
|---|
Tissue expression
|
| Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
| |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|---|
| Star sequence |
Cmi-Novel-1_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UUGUUAGUGUGCCUUGUAAAUA -22
Get sequence
|
|---|
| Mature sequence |
Cmi-Novel-1_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UUUACAAAGUGCACUAGAGCCA -61
Get sequence
|
|---|
